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Table 3 Additional pathogenic variants presented in patients may not be relevent

From: Applying next generation sequencing with microdroplet PCR to determine the disease-causing mutations in retinal dystrophies

Sample ID

Clincial Diagnosis

Family Inheritance

Candidate Gene(s)

Transcript

Nucleotide Change

Amino Acid Change

Genotypes (Sanger confirmed)

HGMD or dbSNP IDs

References (or in silico Analysis)

RD11–03

RP

Autosomal dominant

RHO

NM_000539.3

c.574dup

p.Y192Lfs*139

Heterozygous

Novel

(predicted as pathogenic)

 
   

CNGA3

NM_001298.2

c.1810C > T

p.Q604*

Heterozygous

Novel

(predicted as pathogenic)

 

RD20–07

CRD

Autosomal dominant

PRPH2

NM_000322.4

c.514C > T

p.R172W

Heterozygous

CM930639

 

[28]

   

CERKL

NM_001030311.2

c.847C > T

p.R283*

Heterozygous

CM040509/rs121909398

 

[47]

RD14–08

RP

Autosomal recessive

USH2A

NM_206933.2

c.2276G > T

p.C759F

Heterozygous

CM001372

 

[30]

   

USH2A

 

c.4108G > C

p.V1370 L

Heterozygous

Novel

(predicted as pathogenic)

 
   

GUCY2D

NM_000180.3

c.2950 T > C

p.C984R

Heterozygous

Novel

(predicted as pathogenic)

 

RD12–02

XLRP

X-linked

RPGR

NM_000328.2

c.1088_1089delinsA

p.V363Dfs*18

Hemizygous

Novel

(predicted as pathogenic)

 
   

CACNA1F

NM_005183.3

c.1619 T > C

p.F540S

Hemizygous

Novel

(predicted as pathogenic)

 
   

TMEM67

NM_153704.5

c.1387C > T

p.R463*

Heterozygous

CM110634

 

[48]

RD12–01

RP

Sporadic

RPGR

NM_000328.2

c.197A > G

p.Q66R

Hemizygous

Novel

(predicted as pathogenic)

 
   

TYR

NM_000372.4

c.721G > A

p.A241T

Heterozygous

CM145799

(DM?)/rs538081629

[49]

RD13–02

RP

Sporadic

RHO

NM_000539.3

c.68C > A

p.P23H

Heterozygous

CM900197

 

[36]

   

ABCA4

NM_000350.2

c.1610G > A

p.R537H

Heterozygous

CM032805

 

[50]

RD12–07

RP

Sporadic

RHO

NM_000539.3

c.936 + 1G > T

IVS4 + 1G > T

Heterozygous

CS920776

 

[37]

   

TYRP1

NM_000550.2

c.1354A > G

p.M452 V

Heterozygous

CM081465

 

[51]

RD13–08

Achromatopsia

Sporadic

CNGB3

NM_019098.4

c.1148delC

p.T383Ifs*13

Heterozygous

CD001927

 

[52]

   

ABCA4

NM_000350.2

c.6089G > A

p.R2030Q

Heterozygous

CM990070/rs61750641

 

[53]

   

RPGRIP1

NM_020366.3

c.1767G > T

p.Q589H

Heterozygous

CM057749/rs34067949

 

[45]