Table 2 Analysis of neighbor genes of the noncoding RNA transcripts (Group C versus Group A)
Gene Symbol | Fold Change | P-value | Regulation | Same Strand Gene with Overlap | Up Stream Gene in 10,000 bp | Down Stream Gene in 10,000 bp | Complementary Strand Gene with Overlap |
|---|---|---|---|---|---|---|---|
AP000487.4 | 1.57 | 0.03 | up | PPFIA1 | |||
RP11-242O24.3 | 2.02 | 0.03 | up | SRSF4 | |||
RP5-956O18.3 | −2.76 | <0.01 | down | GALNT2 | |||
CITF22-24E5.1 | 1.76 | 0.01 | up | PVALB | |||
AC005009.2 | −1.68 | 0.01 | down | GRM3 | |||
RP4-613B23.3 | 2.03 | <0.01 | up | HHATL | |||
RP11-49O14.3 | −1.98 | 0.01 | down | C9orf3 | |||
AP000320.6 | 1.8 | 0.03 | up | KCNE2 | |||
RP4-631H13.2 | −1.89 | 0.01 | down | ZYG11A | |||
RP5-1125A11.4 | 1.78 | 0.02 | up | RALY | |||
CTD-2023 N9.1 | −1.64 | 0.03 | down | ACTBL2 | |||
CTD-2116 N20.1 | 1.92 | 0.03 | up | ADAMTS6 | |||
CTD-2201E9.4 | −1.96 | 0.01 | down | SEMA5A | |||
CTC-345 K18.2 | 1.71 | 0.04 | up | MYOZ3 | |||
CTC-348 L14.1 | 1.58 | 0.04 | up | VCAN | |||
RP11-654G14.1 | −2.16 | <0.01 | down | SLC30A8 | SLC30A8 | ||
RP11-279 L11.1 | −1.53 | 0.02 | down | CSMD1 | |||
KB-1083B1.1 | −1.66 | 0.03 | down | SNX31 | |||
RP11-173P15.3 | −1.57 | 0.04 | down | MLEC | |||
RP11-1018 J8.2 | 1.56 | 0.01 | up | RERG | RERG | ||
RP13-820C6.2 | −2.22 | 0.02 | down | EP400 | |||
RP11-310I24.1 | 1.55 | 0.01 | up | TMTC1 | |||
RP1-267 L14.3 | 2.13 | 0.04 | up | NAA25 | |||
RP11-344B23.2 | −1.67 | 0.03 | down | PAX5 | |||
RP11-138H8.6 | 2.43 | 0.03 | up | LARP6 | LARP6 | ||
RP11-133 K1.5 | 1.71 | 0.04 | up | PLCB2 | |||
RP11-538I12.3 | −1.73 | 0.02 | down | ADAMTS18 | |||
AC004449.6 | −1.77 | 0.04 | down | RNF126 | POLRMT | ||
RP11-327F22.5 | −1.78 | 0.04 | down | CYLD | |||
RP11-30 L15.6 | 1.8 | 0.01 | up | LYPLA1 | |||
RP13-638C3.4 | 1.6 | 0.01 | up | FOXK2 | |||
RP11-227G15.2 | 1.73 | 0.03 | up | RHBDL3 | C17orf75 | ||
RP11-715F3.2 | 1.65 | 0.02 | up | METTL4 | METTL4 | METTL4 | |
RP11-640I15.1 | −2.17 | 0.04 | down | AC005324.3 TRIM16 | |||
RP11-973H7.3 | 2.84 | 0.03 | up | CEP76 | CEP76 | PSMG2 | |
CTB-189B5.3 | 1.58 | 0.02 | up | FBXO27 | |||
RP11-91G21.1 | −1.54 | 0.02 | down | U2SURP | |||
RP3-467 L1.6 | −1.85 | 0.02 | down | VAMP3 | CAMTA1 | PER3 | |
LL09NC01-139C3.1 | 1.58 | 0.02 | up | WDR5 |