From: Spectrum of variants associated with inherited retinal dystrophies in Northeast Mexico
ID | Gene | NM ID | Zygocity | cDNA change | Protein change | ACMG | Reference |
---|---|---|---|---|---|---|---|
ar RP | |||||||
24 | CABP4 | NM_145200.3 | Hom | c.154C>T | p.Arg52* | PV | [16] |
35 | CEP78 | NM_001098802.1 | Hom | c.473G>T | p.Cys158Phe | LPV | Novel |
2 | CLN3 | NM_001042432.1 | Het | c.944dup | p.His315Glnfs*67 | PV | [17] |
2 | CLN3 | NM_001042432.1 | Het | c.1305C>G | p.Cys435Trp | VUS | Novel |
13 | CLN3 | NM_001042432.1 | Het | c.1A>G | p.Met1? | PV | [18] |
13 | CLN3 | NM_001042432.1 | Het | c.464T>G | p.Val155Gly | VUS | Novel |
39 | CNGA1 | NM_000087.3 | Het | c.652C>T | p.Arg218* | PV | [19] |
39 | CNGA1 | NM_000087.3 | Het | c.1065G>C | p.Trp355Cys | VUS | Novel |
85 | CNGB1 | NM_001297.4 | Hom | c.290+2T>C Splice donor | LPV | [20] | |
92 | CNGB1 | NM_001297.4 | Hom | c.2957A>T | p.Asn986Ile | PV | [21] |
84 | CRB1 | NM_201253.2 | Het | c.2290C>T | p.Arg764Cys | PV | [22] |
84 | CRB1 | NM_201253.2 | Het | c.2171_2172del | p.Tyr724Cysfs*6 | PV | [23] |
10 | EYS | NM_001142800.1 | Het | c.4120C>T | p.Arg1374* | PV | [24] |
10 | EYS | NM_001142800.1 | Het | c.6079-2A>G Splice acceptor | LPV | Novel | |
90 | EYS | NM_001142800.1 | Het | c.5928-2A>G Splice acceptor | PV | [20] | |
90 | EYS | NM_001142800.1 | Het | c.6794del | p.Pro2265Glnfs*46 | PV | [25] |
63 | IFT172 | NM_015662.2 | Het | c.4868C>T p.Thr1623Ile | p.Thr1623Ile | LPV | Novel |
63 | IFT172 | NM_015662.2 | Het | c.4876_4878dup | p.Pro1626dup | VUS | Novel |
56 | KIZ | NM_018474.4 | Hom | c.226C>T | p.Arg76* | PV | [26] |
48 | PDE6A | NM_000440.2 | Het | c.1705C>A | p.Gln569Lys | PV | [27] |
48 | PDE6A | NM_000440.2 | Het | c.1957C>T | p.Arg653* | PV | [28] |
94 | PDE6A | NM_000440.2 | Hom | c.2053G>A | p.Val685Met | PV | [29] |
18 | USH2A | NM_206933.2 | Het | c.2276G>T | p.Cys759Phe | PV | [30] |
18 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
50 | USH2A | NM_206933.2 | Hom | c.2276G>T | p.Cys759Phe | PV | [30] |
68 | USH2A | NM_206933.2 | Het | c.2276G>T | p.Cys759Phe | PV | [30] |
68 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
83 | USH2A | NM_206933.2 | Het | c.2276G>T | p.Cys759Phe | PV | [30] |
83 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
88 | USH2A | NM_206933.2 | Het | c.10820A>C | p.His3607Pro | PV | [32] |
88 | USH2A | NM_206933.2 | Het | c.12575G>A | p.Arg4192His | PV | [33] |
93 | USH2A | NM_206933.2 | Het | c.12067-2A>G Splice acceptor | LPV | [31] | |
93 | USH2A | NM_206933.2 | Het | c.8188C>A | p.Pro2730Thr | VUS | Novel |
ad RP | |||||||
14 | IMPDH1 | NM_000883.3 | Het | c.931G>A | p.Asp311Asn | PV | [32] |
77 | PRPF3 | NM_004698.2 | Het | c.1477C>T (p.Pro493Ser) | PV | [34] | |
80 | PRPH2 | NM_000322.4 | Het | c.514C>T | p.Arg172Trp | PV | [35] |
19 | SAG | NM_000541.4 | Het | c.440G>T | p.Cys147Phe | PV | [34] |
45 | SAG | NM_000541.4 | Het | c.440G>T | p.Cys147Phe | PV | [34] |
51 | SAG | NM_000541.4 | Het | c.440G>T | p.Cys147Phe | PV | [34] |
57 | SNRNP200 | NM_014014.4 | Het | c.2580G>C | p.Gln860His | PV | Novel |
xl RP | |||||||
64 | RPGR | NM_001034853.2 | Hem | c.2426_2427del | p.Glu809Glyfs*25 | PV | [36] |
66 | RPGR | NM_000328.2 | Hem | Deletion Exons 8-18 | PV | Novel | |
69 | RPGR | NM_001034853.2 | Het | c.1206_1215del | p.Gln403Tyrfs*19 | PV | [37] |
78 | RPGR | NM_000328.2 | Hem | c.934+1G>C Splice donor | PV | [38] | |
28 | RP2 | NM_006915.2 | Hem | c.542_543del | p.Ser181Trpfs*37 | PV | [39] |
86 | RP2 | NM_006915.2 | Hem | c.102G>A Silent | LPV | [40] | |
CRD | |||||||
49 | CFAP410 | NM_004928.2 | Het | c.347C>T | p.Pro116Leu | PV | [41] |
49 | CFAP410 | NM_004928.2 | Het | c.115_117dup | p.Met39dup | VUS | Novel |
72 | CNGA3 | NM_001298.2 | Het | c.1228C>T | p.Arg410Trp | PV | [42] |
72 | CNGA3 | NM_001298.2 | Het | c.1585G>A | p.Val529Met | PV | [42] |
82 | CNGB3 | NM_019098.4 | Het | c.1810C>T | p.Arg604* | PV | [43] |
82 | CNGB3 | NM_019098.4 | Het | c.701_702delinsAG | p.Cys234* | PV | [44] |
79 | PDE6C | NM_006204.3 | Hom | c.221del | p.Gly74Alafs*69 | PV | [45] |
12 | POC1B | NM_172240.2 | Hom | c.144del | p.Lys48Asnfs*16 | PV | [46] |
71 | POC1B | NM_172240.2 | Het | c.676+1G>A (Splice donor) | PV | [20] | |
71 | POC1B | NM_172240.2 | Het | c.320G>T | p.Ser107Ile | VUS | Novel |
9 | PROM1 | NM_006017.2 | Het | c.2130+2del (Splice site) | PV | [47] | |
9 | PROM1 | NM_006017.2 | Het | c.1423_1424del | p.Val475Leufs*42 | PV | [48] |
16 | PROM1 | NM_006017.2 | Hom | c.2130+2del (Splice site) | PV | [47] | |
7 | USH2A | NM_206933.2 | Het | c.2276G>T | p.Cys759Phe | PV | [30] |
7 | USH2A | NM_206933.2 | Het | c.9799T>C | p.Cys3267Arg | PV | [49] |
STGD/ MD | |||||||
5 | ABCA4 | NM_000350.2 | Hom | c.4926C>G | p.Ser1642Arg | PV | [49] |
5 | ABCA4 | NM_000350.2 | Hom | c.5044_5058del | p.Val1682_Val1686del | PV | [50] |
6 | ABCA4 | NM_000350.2 | Het | c.5318C>T | p.Ala1773Val | PV | [51] |
6 | ABCA4 | NM_000350.2 | Het | c.634C>T | p.Arg212Cys | PV | [52] |
15 | ABCA4 | NM_000350.2 | Het | c.1804C>T | p.Arg602Trp | PV | [53] |
15 | ABCA4 | NM_000350.2 | Het | c.3386G>T | p.Arg1129Leu | PV | [50] |
22 | ABCA4 | NM_000350.2 | Het | c.2908del | p.Thr970Profs*7 | PV | [54] |
22 | ABCA4 | NM_000350.2 | Het | c.5882G>A | p.Gly1961Glu | PV | [55] |
23 | ABCA4 | NM_000350.2 | Het | c.4926C>G | p.Ser1642Arg | PV | [49] |
23 | ABCA4 | NM_000350.2 | Het | c.5044_5058del | p.Val1682_Val1686del | PV | [50] |
23 | ABCA4 | NM_000350.2 | Het | c.5318C>T | p.Ala1773Val | PV | [51] |
27 | ABCA4 | NM_000350.2 | Het | c.3386G>T | p.Arg1129Leu | PV | [50] |
27 | ABCA4 | NM_000350.2 | Het | c.4457C>T | p.Pro1486Leu | PV | [50] |
32 | ABCA4 | NM_000350.2 | Het | c.3386G>T | p.Arg1129Leu | PV | [50] |
32 | ABCA4 | NM_000350.2 | Het | c.6718A>G | p.Thr2240Ala | PV | [56] |
32 | ABCA4 | NM_000350.2 | Het | c.4352+61G>A (Intronic) | LPV | [57] | |
41 | ABCA4 | NM_000350.2 | Het | c.4537dup | p.Gln1513Profs*42 | PV | [58] |
41 | ABCA4 | NM_000350.2 | Het | c.5461-1G>T (Splice acceptor) | PV | [59] | |
44 | ABCA4 | NM_000350.2 | Het | c.3386G>T | p.Arg1129Leu | PV | [50] |
44 | ABCA4 | NM_000350.2 | Het | c.4139C>T | p.Pro1380Leu | PV | [60] |
58 | ABCA4 | NM_000350.2 | Het | c.2894A>G | p.Asn965Ser | PV | [61] |
58 | ABCA4 | NM_000350.2 | Het | c.5196+1137G>A (Intronic) | PV | [62] | |
60 | ABCA4 | NM_000350.2 | Het | c.5318C>T | p.Ala1773Val | PV | [51] |
60 | ABCA4 | NM_000350.2 | Het | c.6221G>T | p.Gly2074Val | PV | [51] |
61 | ABCA4 | NM_000350.2 | Het | c.1804C>T | p.Arg602Trp | PV | [53] |
61 | ABCA4 | NM_000350.2 | Het | c.4253+4C>T (Intronic) | PV | [63] | |
62 | ABCA4 | NM_000350.2 | Het | c.3322C>T | p.Arg1108Cys | PV | [64] |
62 | ABCA4 | NM_000350.2 | Het | c.4139C>T | p.Pro1380Leu | PV | [58] |
81 | ABCA4 | NM_000350.2 | Het | c.3113C>T | p.Ala1038Val | PV | [65] |
81 | ABCA4 | NM_000350.2 | Het | c.6221G>T | p.Gly2074Val | PV | [51] |
91 | ABCA4 | NM_000350.2 | Het | c.4926C>G | p.Ser1642Arg | PV | [49] |
91 | ABCA4 | NM_000350.2 | Het | c.5044_5058del | p.Val1682_Val1686del | PV | [50] |
91 | ABCA4 | NM_000350.2 | Het | c.6581del | p.Pro2194Glnfs*53 | PV | [66] |
52 | ARL3 | NM_004311.3 | Het | c.445C>T | p.Arg149Cys | PV | [67] |
3 | PROM1 | NM_006017.2 | Het | c.2130+2del (Splice site) | PV | [47] | |
3 | PROM1 | NM_006017.2 | Het | c.220+1G>C (Splice donor) | PV | [68] | |
37 | PROM1 | NM_006017.2 | Het | c.2130+2del (Splice site) | PV | [48] | |
37 | PROM1 | NM_006017.2 | Het | c.436C>T | p.Arg146* | PV | [48] |
43 | PROM1 | NM_006017.2 | Hom | c.1423_1424del | p.Val475Leufs*42 | PV | [48] |
67 | BEST1 | NM_004183.3 | Het | c.851A>G | p.Tyr284Cys | PV | [72] |
LCA | |||||||
1 | NMNAT1 | NM_022787.3 | Het | c.507G>A | p.Trp169* | PV | [69] |
1 | NMNAT1 | NM_022787.3 | Het | c.769G>A | p.Glu257Lys | PV | [69] |
75 | CEP290 | NM_025114.3 | Het | Gain (Exons 16-26) | PV | Novel | |
75 | CEP290 | NM_025114.3 | Het | c.4651C>T | p.Gln1551* | PV | [70] |
RS1 | |||||||
8 | RS1 | NM_000330.3 | Hem | c.208G>A | p.Gly70Ser | PV | [71] |
11 | RS1 | NM_000330.3 | Hem | c.208G>A | p.Gly70Ser | PV | [71] |
89 | RS1 | NM_000330.3 | Hem | c.208G>A | p.Gly70Ser | PV | [71] |
Usher | |||||||
17 | ADGRV1 | NM_032119.3 | Het | c.10054-2A>C (Splice acceptor) | PV | [73] | |
17 | ADGRV1 | NM_032119.3 | Het | c.1563dup | p.Pro522Serfs*8 | PV | [73] |
4 | USH2A | NM_206933.2 | Het | c.1000C>T | p.Arg334Trp | PV | [74] |
4 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
20 | USH2A | NM_206933.2 | Hom | c.486-14G>A (Intronic) | PV | [75] | |
25 | USH2A | NM_206933.2 | Het | c.12067-2A>G Splice acceptor | LPV | [31] | |
25 | USH2A | NM_206933.2 | Het | c.956G>A | p.Cys319Tyr | PV | [76] |
26 | USH2A | NM_206933.2 | Hom | c.2299del | p.Glu767Serfs*21 | PV | [31] |
29 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
29 | USH2A | NM_206933.2 | Het | c.4016T>G | p.Val1339Gly | LPV | [77] |
30 | USH2A | NM_206933.2 | Hom | c.5278del | p.Asp1760Metfs*10 | [78] | |
31 | USH2A | NM_206933.2 | Hom | c.2299del | p.Glu767Serfs*21 | PV | [31] |
36 | USH2A | NM_206933.2 | Hom | c.2299del | p.Glu767Serfs*21 | PV | [31] |
38 | USH2A | NM_206933.2 | Het | c.2276G>T | p.Cys759Phe | PV | [30] |
38 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
40 | USH2A | NM_206933.2 | Hom | c.2299del | p.Glu767Serfs*21 | PV | [31] |
46 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
46 | USH2A | NM_206933.2 | Het | c.9424G>T | p.Gly3142* | PV | [31] |
47 | USH2A | NM_206933.2 | Het | c.1606T>C (p.Cys536Arg) | PV | [79] | |
47 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
53 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
53 | USH2A | NM_206933.2 | Het | c.956G>A | p.Cys319Tyr | PV | [31] |
55 | USH2A | NM_206933.2 | Hom | c.12067-2A>G Splice acceptor | LPV | [31] | |
59 | USH2A | NM_206933.2 | Het | c.12067-2A>G Splice acceptor | LPV | [31] | |
59 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
65 | USH2A | NM_206933.2 | Het | c.12067-2A>G Splice acceptor | LPV | [31] | |
65 | USH2A | NM_206933.2 | Het | c.956G>A | p.Cys319Tyr | PV | [76] |
70 | USH2A | NM_206933.2 | Hom | c.2299del | p.Glu767Serfs*21 | PV | [31] |
73 | USH2A | NM_206933.2 | Het | c.2299del | p.Glu767Serfs*21 | PV | [31] |
73 | USH2A | NM_206933.2 | Het | c.12067-2A>G Splice acceptor | LPV | [31] | |
74 | USH2A | NM_206933.2 | Hom | c.2299del | p.Glu767Serfs*21 | PV | [31] |
87 | USH2A | NM_206933.2 | Hom | c.2299del | p.Glu767Serfs*21 | PV | [31] |
5 | USH2A | NM_206933.2 | Hom | c.2276G>T | p.Cys759Phe | PV | [30] |
Other syndromes | |||||||
76 | ALMS1 | NM_015120.4 | Het | c.10975C>T (p.Arg3659*) | PV | [80] | |
76 | ALMS1 | NM_015120.4 | Het | c.1730C>G (p.Ser577*) | PV | [81] | |
34 | ARL6 | NM_177976.2 | Hom | c.228C>G (p.Tyr76*) | PV | [14] | |
21 | BBS5 | NM_152384.2 | Hom | c.143-1G>C (Splice acceptor) | PV | [82] | |
33 | HGSNAT | NM_152419.2 | Het | Deletion (Exons 1-2) | PV | Novel | |
33 | HGSNAT | NM_152419.2 | Het | c.185T>C (p.Leu62Pro) | VUS | Novel | |
54 | PRPS1 | NM_002764.3 | Het | c.250C>T (p.Arg84Trp) | PV | [83] | |
42 | WFS1 | NM_006005.3 | Het | c.2189G>A (p.Trp730*) | PV | [84] |